Folder | Products | Analytical Process Name | Input Data Format | PROC(s) Used |
---|---|---|---|---|
Annotation |
Microarray |
Create Gene Annotation (AP) |
File containing a column of gene identifier |
REGISTRYIMPORTSORT |
Design |
Microarray, Proteomics |
Experimental Design 1-Way |
N/A |
PLANOPTEXTRANSPOSEPRINT |
Design |
Microarray, Proteomics |
Mixed Model Power |
Stacked |
MIXED |
Genetics |
Marker |
Case_Control Association |
Input data: 2 columns per marker, 1 row per individual. Annotation data: 1 row per marker |
CASECONTROLPSMOOTHSORTPRINT |
Genetics |
Genetic Marker |
Haplotype Estimation |
Input data: 2 columns per marker, 1 row per individual. Annotation data: 1 row per marker |
HAPLOTYPEPSMOOTHSORT |
Genetics |
Genetic Marker |
Haplotype Trend Regression |
Input data: 2 columns per marker, 1 row per individual. Annotation data: 1 row per marker |
HAPLOTYPELOGISTICREGSORTPRINTTRANSPOSE |
Genetics |
Genetic Marker |
Linkage Disequilibrium |
Input data: 2 columns per marker, 1 row per individual. Annotation data: 1 row per marker |
ALLELESORTSUMMARYPRINT |
Genetics |
Genetic Marker |
Marker Properties |
Input data: 2 columns per marker, 1 row per individual. Annotation data: 1 row per marker |
ALLELESORTTRANSPOSE |
Genetics |
Genetic Marker |
Phenotype Summary |
SAS data set |
SORTFREQ |
Genetics |
Genetic Marker |
Quantitative TDT |
Input data: 2 columns per marker, 1 row per individual. Annotation data: 1 row per marker |
ALLELEPSMOOTHMIXEDGLMREGUNIVARIATESORTPRINT |
Genetics |
Genetic Marker |
Quantitative Trait Association |
Input data: 2 columns per marker, 1 row per individual. Annotation data: 1 row per marker |
ALLELEPSMOOTHMIXEDGLMREGSORTPRINT |
Genetics |
Genetic Marker |
TDT |
Input data: 2 columns per marker, 1 row per individual. Annotation data: 1 row per marker |
FAMILYPSMOOTHSORTPRINT |
Input Engines |
Genetic Marker |
Arlequin Input Engine |
Arlequin format (*.arp) |
SORT |
Input Engines |
Genetic Marker |
NEXUS Input Engine |
NEXUS format (*.nex) |
|
Input Engines |
Genetic Marker |
Pedigree Input Engine |
Various types of pedigree data |
IMPORTSORT |
Input Engines |
Microarray |
Affymetrix Input Engine |
Design Table Affy CEL version 3 (*.cel) Affy CEL version 4 (*.cel Affy CHP (*.chp) |
DATASETSREGISTRYIMPORTSORT |
Input Engines |
Microarray |
Agilent Input Engine |
Design Table Agilent raw file (*.txt) |
DATASETSREGISTRYIMPORTSORT |
Input Engines |
Microarray |
GenePix Input Engine |
Design Table Genepix raw file (*.gpr) |
DATASETSREGISTRYIMPORTSORT |
Input Engines |
Microarray |
QuantArray Input Engine |
Design Table QuantArray raw file (*.txt) |
DATASETSREGISTRYIMPORTSORT |
Input Engines |
Microarray |
ScanAlyze Input Engine |
Design Table ScanAlyze raw file (*.dat) |
DATASETSREGISTRYIMPORTSORT
|
Input Engines |
Research Data Management (RDM) |
Data Import Input Engine |
Tab, CSV, Excel, SAS, space-delimited
|
DATASETSREGISTRYIMPORT |
Input Engines |
RDM |
Experiment Input Engine |
Design Table Tab, CSV, Excel, SAS, space-delimited |
DATASETSREGISTRYIMPORTSORT |
Normalization |
Microarray |
Loess Normalization |
Stacked |
LOESSMEANSSORTDATASETSAPPENDTRANSPOSE |
Normalization |
Microarray |
Quantile Normalization |
Stacked |
MEANSSORT |
Normalization |
Microarray, Proteomics |
Mixed Model Normalization |
Stacked |
MIXEDMEANSSORT |
Normalization |
RDM |
Data Standardize |
Stacked |
STDIZE |
Pattern Discovery |
Microarray |
Hierarchical Clustering |
Rectangular, rows are clustered |
TRANSPOSE |
Pattern Discovery |
Microarray |
K-Means Clustering |
Rectangular, rows are clustered |
TRANSPOSE |
Pattern Discovery |
Microarray, Proteomics |
Distance Matrix |
Rectangular, distances between rows are calculated |
%DISTANCESORT |
Pattern Discovery |
Microarray, Proteomics |
Multidimensional Scaling |
Square (distance matrix) |
MDSSORT |
Pattern Discovery |
Microarray, Proteomics |
Principal Components |
Rectangular, principal linear combinations of the columns are computed, and scores are displayed for each row |
PLSGLMMODTRANSPOSE |
Quality Control |
Microarray |
Array Pseudo Image |
Stacked |
STDIZEUNIVARIATEMEANSDATASETSAPPENDSORTTRANSPOSE |
Quality Control |
Microarray, Proteomics |
Array Group Correlation |
Stacked |
SURVEYSELECTSORTTRANSPOSE |
Quality Control |
Microarray, Proteomics |
Surface Summary |
Stacked |
KDEUNIVARIATEMEANSSORTFORMATG3D |
Quality Control |
RDM |
Ratio Analysis |
Stacked |
LOESSMEANSSORTCONTENTS |
Spectral Analysis |
Proteomics |
Spectral Bin |
Rectangular, with samples as columns |
MEANS |
Spectral Analysis |
Proteomics |
Spectral Detrend |
Rectangular, with samples as columns |
TRANSPOSE |
Spectral Analysis |
Proteomics |
Spectral Peak Find |
Rectangular, with samples as columns |
IMLSORTTRANSPOSE |
Spectral Analysis |
Proteomics |
Spectral Plot |
Rectangular, with samples as columns |
TRANSPOSE |
Statistical Modeling |
Microarray, Proteomics |
Discriminant Analysis |
Rectangular, with predictors and class as columns |
TRANSPOSE |
Statistical Modeling |
Microarray, Proteomics |
Mixed Model Analysis |
Stacked |
MIXEDMULTTESTMEANSSTDIZEDATASETSCONTENTSSORTTRANSPOSEPRINT |
Statistical Modeling |
Microarray, Proteomics |
Partial Least Squares |
Rectangular, with Xs and Ys as columns |
PLSGLMMODTRANSPOSE |
Statistical Modeling |
Microarray, Proteomics |
Partition Trees |
Rectangular, with predictors and Y as columns |
TRANSPOSE |
Utilities |
RDM |
Data Contents |
Any SAS data set |
CONTENTSPRINT |
Utilities |
RDM |
Data Correlation |
Rectangular |
CORRTRANSPOSE |
Utilities |
RDM |
Data Export |
Any SAS data set |
EXPORT |
Utilities |
RDM |
Data Filter |
Stacked |
MIXEDCORRMULTTESTMEANSDATASETSCONTENTSSORT |
Utilities |
RDM |
Data Merge |
Any SAS data set |
SORT |
Utilities |
RDM |
Data Rank |
Any SAS data set |
RANKSORT |
Utilities |
RDM |
Data Sort |
Any SAS data set |
SORT |
Utilities |
RDM |
Data Step |
Any SAS data set |
|
Utilities |
RDM |
Data Summary |
Any SAS data set |
SORTSUMMARY |
Utilities |
RDM |
Data Transpose |
Stacked |
MEANSSORTTRANSPOSE |
Utilities |
RDM |
Data Transpose Rectangular |
Any SAS data set |
SORTTRANSPOSE |